Complete Resequencing and Reannotation of the Lactobacillus plantarum WCFS1 Genome
- 7 December 2011
- journal article
- Published by American Society for Microbiology in Journal of Bacteriology
- Vol. 194 (1), 195-196
- https://doi.org/10.1128/jb.06275-11
Abstract
There is growing interest in the beneficial effects of Lactobacillus plantarum on human health. The genome of L. plantarum WCFS1, first sequenced in 2001, was resequenced using Solexa technology. We identified 116 nucleotide corrections and improved function prediction for nearly 1,200 proteins, with a focus on metabolic functions and cell surface-associated proteins.Keywords
This publication has 54 references indexed in Scilit:
- BRENDA, the enzyme information system in 2011Nucleic Acids Research, 2010
- An Ergatis-based prokaryotic genome annotation web serverBioinformatics, 2010
- The Pfam protein families databaseNucleic Acids Research, 2009
- Differential NF-κB pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune toleranceProceedings of the National Academy of Sciences, 2009
- The Transporter Classification Database: recent advancesNucleic Acids Research, 2009
- Artemis and ACT: viewing, annotating and comparing sequences stored in a relational databaseBioinformatics, 2008
- The Carbohydrate-Active EnZymes database (CAZy): an expert resource for GlycogenomicsNucleic Acids Research, 2008
- Pfam: clans, web tools and servicesNucleic Acids Research, 2006
- Predicting cis-acting elements of Lactobacillus plantarum by comparative genomics with different taxonomic subgroupsNucleic Acids Research, 2006
- BLAT—The BLAST-Like Alignment ToolGenome Research, 2002