Analysis methods for comparison of multiple molecular dynamics trajectories: applications to protein unfolding pathways and denatured ensembles
- 2 July 1999
- journal article
- research article
- Published by Elsevier BV in Journal of Molecular Biology
- Vol. 290 (1), 283-304
- https://doi.org/10.1006/jmbi.1999.2843
Abstract
No abstract availableKeywords
This publication has 48 references indexed in Scilit:
- Molecular dynamics simulations of hydrophobic collapse of ubiquitinProtein Science, 1998
- Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: Description of the folding pathwayProceedings of the National Academy of Sciences of the United States of America, 1997
- Acid and Thermal Denaturation of Barnase Investigated by Molecular Dynamics SimulationsJournal of Molecular Biology, 1995
- First-Principles Calculation of the Folding Free Energy of a Three-Helix Bundle ProteinScience, 1995
- Funnels, pathways, and the energy landscape of protein folding: A synthesisProteins-Structure Function and Bioinformatics, 1995
- Molecular dynamics simulation of protein denaturation:solvation of the hydrophobic cores and secondary structure ofbarnase.Proceedings of the National Academy of Sciences, 1994
- Crystal Structural Analysis of Mutations in the Hydrophobic Cores of BarnaseJournal of Molecular Biology, 1993
- Determination of the three-dimensional solution structure of barnase using nuclear magnetic resonance spectroscopyBiochemistry, 1991
- Crystal structure of a Barnase-d(GpC) complex at 1.9 Å resolutionJournal of Molecular Biology, 1991
- A fast algorithm for rendering space-filling molecule picturesJournal of Molecular Graphics, 1988