MSAViewer: interactive JavaScript visualization of multiple sequence alignments
Open Access
- 13 July 2016
- journal article
- research article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 32 (22), 3501-3503
- https://doi.org/10.1093/bioinformatics/btw474
Abstract
Summary: The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include interactive navigation through the alignment, application of popular color schemes, sorting, selecting and filtering. The MSAViewer is ‘web ready’: written entirely in JavaScript, compatible with modern web browsers and does not require any specialized software. The MSAViewer is part of the BioJS collection of components. Availability and Implementation: The MSAViewer is released as open source software under the Boost Software License 1.0. Documentation, source code and the viewer are available at http://msa.biojs.net/. Supplementary information: Supplementary data are available at Bioinformatics online. Contact:msa@bio.shKeywords
This publication has 19 references indexed in Scilit:
- Protein disorder—a breakthrough invention of evolution?Current Opinion in Structural Biology, 2011
- Jalview Version 2—a multiple sequence alignment editor and analysis workbenchBioinformatics, 2009
- Clustal W and Clustal X version 2.0Bioinformatics, 2007
- Galaxy: A platform for interactive large-scale genome analysisGenome Research, 2005
- Mauve: Multiple Alignment of Conserved Genomic Sequence With RearrangementsGenome Research, 2004
- Review: Protein Secondary Structure Prediction Continues to RiseJournal of Structural Biology, 2001
- Flexible Sequence Similarity Searching with the FASTA3 Program PackageMethods in molecular biology (Clifton, N.J.), 1999
- Basic Local Alignment Search ToolJournal of Molecular Biology, 1990
- Basic local alignment search toolJournal of Molecular Biology, 1990
- Sequence logos: a new way to display consensus sequencesNucleic Acids Research, 1990