Molecular Recognition and Docking Algorithms
Top Cited Papers
- 1 June 2003
- journal article
- review article
- Published by Annual Reviews in Annual Review of Biophysics
- Vol. 32 (1), 335-373
- https://doi.org/10.1146/annurev.biophys.32.110601.142532
Abstract
Molecular docking is an invaluable tool in modern drug discovery. This review focuses on methodological developments relevant to the field of molecular docking. The forces important in molecular recognition are reviewed and followed by a discussion of how different scoring functions account for these forces. More recent applications of computational chemistry tools involve library design and database screening. Last, we summarize several critical methodological issues that must be addressed in future developments.Keywords
This publication has 142 references indexed in Scilit:
- Rapid refinement of protein interfaces incorporating solvation: application to the docking problemJournal of Molecular Biology, 1998
- Development and validation of a genetic algorithm for flexible docking 1 1Edited by F. E. CohenJournal of Molecular Biology, 1997
- Molecular docking to ensembles of protein structures 1 1Edited by B. HonigJournal of Molecular Biology, 1997
- A Fast Flexible Docking Method using an Incremental Construction AlgorithmJournal of Molecular Biology, 1996
- Expression and Structural Analysis of 14-3-3 ProteinsJournal of Molecular Biology, 1995
- Ligand docking to proteins with discrete side-chain flexibilityJournal of Molecular Biology, 1994
- A method for fast energy estimation and visualization of protein-ligand interactionJournal of Computer-Aided Molecular Design, 1987
- A geometric approach to macromolecule-ligand interactionsJournal of Molecular Biology, 1982
- Computer analysis of protein-protein interactionJournal of Molecular Biology, 1978
- An hypothetical structure for an intermolecular electron transfer complex of cytochromes c and b5Journal of Molecular Biology, 1976