Fidelity of synthesis of preribosomal RNA in isolated nucleoli and nucleolar chromatin.

Abstract

Comparisons were made of the T1 RNase digests of 32P-labeled nucleolar 45S RNA of intact [rat] Novikoff hepatoma cells and the RNA synthesized in vitro by isolated nucleoli. Approximately 200 oligonucleotide spots were found in the 2-dimensional chromatogram of 45S nucleolar RNA labeled in vivo, which includes fragments of 18S and 28S rRNA and nonconserved spacer regions; 4 spots containing 2''-O-methyl nucleotides were not found in the corresponding pattern of RNA labeled in vitro. This high degree of fidelity was retained in the patterns of spots from the RNA produced with nucleolar chromatin as template. This specific expression of rDNA was lost when the nucleolar chromatin was completely deproteinized. Specific spots found in the control patterns were absent and many nonspecific oligonucleotides were labeled. A similar nonspecific chromatogram pattern was found when nucleolar chromatin was transcribed with RNA polymerase (nucleosidetriphosphate:RNA nucleotidyltransferase. EC 2.7.7.6) of Escherichia coli. Specificity of genetic expression in vitro of isolated chromatin of eukaryotic systems was dependent on the chromatin-associated proteins and the type of RNA polymerase present.