The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999
Open Access
- 1 January 1999
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 27 (1), 49-54
- https://doi.org/10.1093/nar/27.1.49
Abstract
SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domain structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases. Recent developments of the database include: cross-references to additional databases; a variety of new documentation files and improvements to TrEMBL, a computer annotated supplement to SWISS-PROT. TrEMBL consists of entries in SWISS-PROT-like format derived from the translation of all coding sequences (CDS) in the EMBL nucleotide sequence database, except the CDS already included in SWISS-PROT. The URLs for SWISS-PROT on the WWW are: http://www.expasy.ch/sprot and http://www.ebi.ac.uk/sprotKeywords
This publication has 14 references indexed in Scilit:
- Highly specific protein sequence motifs for genome analysisProceedings of the National Academy of Sciences, 1998
- Automated protein sequence database classification. I. Integration of compositional similarity search, local similarity search, and multiple sequence alignment.Bioinformatics, 1998
- The EMBL nucleotide sequence databaseNucleic Acids Research, 1998
- The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998Nucleic Acids Research, 1998
- The ProDom database of protein domain familiesNucleic Acids Research, 1998
- Pfam: multiple sequence alignments and HMM-profiles of protein domainsNucleic Acids Research, 1998
- LASSAP, a LArge Scale Sequence compArison Package.Bioinformatics, 1997
- The PROSITE database, its status in 1997Nucleic Acids Research, 1997
- Rapid access to biomedical knowledge with GeneCards and HotMolecBase: Implications for the electrophoretic analysis of large sets of gene productsElectrophoresis, 1997
- The ENZYME data bank in 1995Nucleic Acids Research, 1996