Molecular evidence that the whitefly-transmitted sweetpotato mild mottle virus belongs to a distinct genus of thePotyviridae

Abstract

Complementary DNA representing 2 108 nucleotides at the 3′ end of the genomic RNA of the whitefly-transmitted sweetpotato mild mottle virus (SPMMV) was cloned after PCR. Sequence analysis revealed an open reading frame of 1 797 nucleotides which codes for a protein of 599 amino acids, followed by a 3′ non-coding region of 311 nucleotides. Alignment of the deduced amino acid sequence with corresponding sequences of other members of thePotyviridae demonstrated that part of the presumptive RNA-dependent RNA polymerase and the coat protein coding regions of SPMMV are found at the 3′ end of its genome, in that order. Alignment of the amino acid sequence of the core of SPMMV coat protein with those of selected members of thePotyviridae showed limited identity, thus demonstrating — with phylogenetic analysis — that SPMMV belongs to a distinct genus of the familyPotyviridae.