Compilation of small ribosomal subunit RNA structures
Open Access
- 1 July 1993
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 21 (13), 3025-3049
- https://doi.org/10.1093/nar/21.13.3025
Abstract
The database on small ribosomal subunit RNA structure contained 1804 nucleotide sequences on April 23, 1993. This number comprises 365 eukaryotlc, 65 archaeal, 1260 bacterial, 30 plastldial, and 84 mttochondrial sequences. These are stored in the form of an alignment in order to facilitate the use of the database as input for comparative studies on higherorder structure and for reconstruction of phylogenetic trees. The elements of the postulated secondary structure for each molecule are Indicated by special symbols. The database is available on-line directly from the authors by ftp and can also be obtained from the EMBL nucleotide sequence library by electronic mall, ftp, and on CD ROM disk.Keywords
This publication has 11 references indexed in Scilit:
- Ribosomal RNA: a key to phylogeny.The FASEB Journal, 1993
- Compilation of small ribosomal subunit RNA sequencesNucleic Acids Research, 1992
- Compilation of small ribosomal subunit RNA sequencesNucleic Acids Research, 1991
- Small ribosomal subunit RNA sequences, evolutionary relationships among different life forms, and mitochondrial originsJournal of Molecular Evolution, 1990
- Evidence for several higher order structural elements in ribosomal RNA.Proceedings of the National Academy of Sciences, 1989
- Compilation of small ribosomal subunit RNA sequencesNucleic Acids Research, 1988
- The neighbor-joining method: a new method for reconstructing phylogenetic trees.Molecular Biology and Evolution, 1987
- Bacterial evolution.1987
- Compilation of small ribosomal sobunit RNA sequencesNucleic Acids Research, 1986
- The kingdom PROTISTA and its 45 phylaBiosystems, 1984