α-DNA IX: parallel annealing of α-anomeric oligodeoxyribonucleotides to natural mRNA is required for interference in RNase H mediated hydrolysis and reverse transcription

Abstract
Ps- and aps-.alpha. anomeric oligodeoxyribonucleotides were designed to recognize in parallel (ps) or antiparallel (aps) orientation two different sites of a 1000 base-long mRNA. Northern blots experiments indicate that only ps-.apprx.-oligonucleotides were able to hybridize to the mRNA target. Furthermore, only ps-.alpha.-oligonucleotides were able, in a sequence specific way, to protect the mRNA target against RNase H mediated hydrolysis or to inactivate the priming capacity of .beta.-oligodeoxynucleotide probes in reverse transcription. Formation of parallel-stranded mRNA .alpha.-oligonucleotide miniduplexes which prevents hybridization of .beta.-oligonucleotide probes is the most likely mechanism accounting for these results. Use of .alpha.-oligonucleotides as potential gene control agents is discussed.