Structure and mechanics of single biomolecules: experiment and simulation
- 28 March 2002
- journal article
- review article
- Published by IOP Publishing in Journal of Physics: Condensed Matter
- Vol. 14 (14), R383-R414
- https://doi.org/10.1088/0953-8984/14/14/202
Abstract
One of the main goals of molecular biology is to understand the structure of biomolecules. With the emergence of single molecule manipulation techniques that structure can now be controlled by the application of stretching and torsional stresses. In this article we review some recent experiments on the stretching and twisting of single biopolymers, testing the elastic properties of DNA and proteins and studying their stress-induced structural transitions. Numerical simulations have emerged as a precious tool to interpret the experimental data and predict the associated structural changes. We shall explain how a combination of these experimental and computational tools open a new vista on the structure of biomolecules.Keywords
This publication has 100 references indexed in Scilit:
- X-ray diffraction from DNA fibres under tensionJournal of Molecular Biology, 2001
- Free energy calculations on dimer stability of the HIV protease using molecular dynamics and a continuum solvent modelJournal of Molecular Biology, 2000
- Single molecule force spectroscopy of spectrin repeats: low unfolding forces in helix bundlesJournal of Molecular Biology, 1999
- Solution conformations and thermodynamics of structured peptides: molecular dynamics simulation with an implicit solvation modelJournal of Molecular Biology, 1998
- Determination of Single-Bond Forces from Contact Force Variances in Atomic Force MicroscopyLangmuir, 1996
- Quantitative DNA fiber mappingHuman Molecular Genetics, 1995
- JUMNA (junction minimisation of nucleic acids)Computer Physics Communications, 1995
- The Twist, Writhe and Overall Shape of Supercoiled DNA Change During Counterion-induced Transition from a Loosely to a Tightly Interwound SuperhelixJournal of Molecular Biology, 1994
- Structure of plectonemically supercoiled DNAJournal of Molecular Biology, 1990
- Energetics of DNA twistingJournal of Molecular Biology, 1983