Detailed balancing approach to disordered copolymeric Ising chains
- 1 February 1973
- journal article
- research article
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 58 (3), 1043-1053
- https://doi.org/10.1063/1.1679285
Abstract
The problem of disordered copolymeric one‐dimensional Ising chains with nearest‐neighbor interactions is formulated in full generality, using the principle of detailed balancing. The natural variables in this theory are a set of nearest‐neighbor conditional probabilities and singlets. A set of coupled nonlinear difference equations in these variables is derived, which completely determine the state of the chain with respect to both composition and fine structure. A special but nontrivial case of the general model is treated in detail to illustrate the theory and to make possible comparisons with the work of others. The problem of the strictly alternating copolymer is readily solved by way of illustration. An efficient and accurate numerical approach, employing a Monte Carlo technique, is used to evaluate these equations for disordered chains, both random and nonrandom. Example calculations, based on data for a binary RNA, show the doublet variables to be more sensitive to differences between random and nonrandom chains than the singlets. Triplet and higher configurational probabilities can also be readily calculated. The numerical computations make it clear that our results are equivalent to ensemble average results given by Lehman and McTague who numerically evaluate integral and functional equations for the logarithm of the partition function.Keywords
This publication has 9 references indexed in Scilit:
- One-Dimensional Cooperative Kinetic Model. Equilibrium Solution for Finite ChainsThe Journal of Chemical Physics, 1971
- Phase-Transfer Theory and Its Application to Long Chain Molecules: DNAThe Journal of Chemical Physics, 1971
- Melting of DNAThe Journal of Chemical Physics, 1968
- Comparison of several calculations of helix-coil transitions in hetergeneous polymersBiopolymers, 1968
- Kinetics of reversible reactions on linear lattices with neighbor effectsBiopolymers, 1968
- A general treatment of helix-coil equilibria in macromolecular systemsJournal of Molecular Biology, 1966
- The Heat of the Reaction between Polyriboadenylic Acid and Polyribouridylic AcidJournal of the American Chemical Society, 1963
- Sequence distribution and neighbor effects of various orders in polynucleotidesJournal of Theoretical Biology, 1962
- Synthesis kinetics and sequence distribution in synthetic polynucleotidesJournal of Polymer Science, 1960