Enumeration of all compact conformations of copolymers with random sequence of links
- 15 October 1990
- journal article
- research article
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 93 (8), 5967-5971
- https://doi.org/10.1063/1.459480
Abstract
Exhaustive enumeration of all compact self-avoiding conformations of a chain of 27 monomers on the 3*3*3 fragment of a simple cubic lattice is given. Total number of conformations unrelated by symmetry is 103 346. This number is relatively small which makes it possible to make a numerically exact calculation of all thermodynamic functions this chain. Heteropolymers with random sequence of links were considered, and the freezing transition at finite temperature was observed. This transition is analogous to folding transition in proteins where unique structure is formed. The numeric results demonstrate the equivalence between random 3-dimensional heteropolymers and the random energy model found previously in analytical investigations. The possible application of these results to some problems of combinational optimization is discussed.Keywords
This publication has 11 references indexed in Scilit:
- Implications of thermodynamics of protein folding for evolution of primary sequencesNature, 1990
- Formation of unique structure in polypeptide chainsBiophysical Chemistry, 1989
- Theory of cooperative transitions in protein molecules. I. Why denaturation of globular protein is a first‐order phase transitionBiopolymers, 1989
- Frozen states of a disordered globular heteropolymerJournal of Physics A: General Physics, 1989
- Mean-Field Model for Protein FoldingEurophysics Letters, 1988
- Spin glasses and the statistical mechanics of protein folding.Proceedings of the National Academy of Sciences, 1987
- Theory for the folding and stability of globular proteinsBiochemistry, 1985
- Sample to sample fluctuations in the random energy modelJournal de Physique Lettres, 1985
- Replica symmetry breaking and the nature of the spin glass phaseJournal de Physique, 1984
- Random-energy model: An exactly solvable model of disordered systemsPhysical Review B, 1981