How to map billions of short reads onto genomes
- 1 May 2009
- journal article
- research article
- Published by Springer Nature in Nature Biotechnology
- Vol. 27 (5), 455-457
- https://doi.org/10.1038/nbt0509-455
Abstract
Mapping the vast quantities of short sequence fragments produced by next-generation sequencing platforms is a challenge. What programs are available and how do they work?Keywords
This publication has 10 references indexed in Scilit:
- TopHat: discovering splice junctions with RNA-SeqBioinformatics, 2009
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genomeGenome Biology, 2009
- Annotating genomes with massive-scale RNA sequencingGenome Biology, 2008
- Alternative isoform regulation in human tissue transcriptomesNature, 2008
- Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencingNature Genetics, 2008
- DNA sequencing of a cytogenetically normal acute myeloid leukaemia genomeNature, 2008
- Mapping short DNA sequencing reads and calling variants using mapping quality scoresGenome Research, 2008
- The Transcriptional Landscape of the Yeast Genome Defined by RNA SequencingScience, 2008
- Mapping and quantifying mammalian transcriptomes by RNA-SeqNature Methods, 2008
- Genome-Wide Mapping of in Vivo Protein-DNA InteractionsScience, 2007