Biased Sampling of Nonequilibrium Trajectories: Can Fast Switching Simulations Outperform Conventional Free Energy Calculation Methods?
- 19 March 2005
- journal article
- research article
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry B
- Vol. 109 (14), 6902-6915
- https://doi.org/10.1021/jp044556a
Abstract
We have investigated the maximum computational efficiency of reversible work calculations that change control parameters in a finite amount of time. Because relevant nonequilibrium averages are slow to converge, a bias on the sampling of trajectories can be beneficial. Such a bias, however, can also be employed in conventional methods for computing reversible work, such as thermodynamic integration or umbrella sampling. We present numerical results for a simple one-dimensional model and for a Widom insertion in a soft sphere liquid, indicating that, with an appropriately chosen bias, conventional methods are in fact more efficient. We describe an analogy between nonequilibrium dynamics and mappings between equilibrium ensembles, which suggests that the practical inferiority of fast switching is quite general. Finally, we discuss the relevance of adiabatic invariants in slowly driven Hamiltonian systems for the application of Jarzynski's theorem.Keywords
This publication has 28 references indexed in Scilit:
- A path-sampling scheme for computing thermodynamic properties of a many-body system in a generalized ensembleZeitschrift für Physik B Condensed Matter, 2004
- Fast-growth thermodynamic integration: Error and efficiency analysisThe Journal of Chemical Physics, 2001
- Annealing Markov Chain Monte Carlo with Applications to Ancestral InferenceJournal of the American Statistical Association, 1995
- Estimation of errors in free energy calculations due to the lag between the hamiltonian and the system configurationThe Journal of Physical Chemistry, 1991
- Monte Carlo free energy estimates using non-Boltzmann sampling: Application to the sub-critical Lennard-Jones fluidChemical Physics Letters, 1974
- Some Topics in the Theory of FluidsThe Journal of Chemical Physics, 1963
- High-Temperature Equation of State by a Perturbation Method. I. Nonpolar GasesThe Journal of Chemical Physics, 1954
- Adiabatische Invarianten und QuantentheorieAnnalen der Physik, 1916
- Über die mechanischen Grundlagen der ThermodynamikAnnalen der Physik, 1910
- Über die mechanischen Grundlagen der ThermodynamikAnnalen der Physik, 1910