Mass Spectrometry-Based Quantification of Pseudouridine in RNA
- 3 May 2011
- journal article
- research article
- Published by American Chemical Society (ACS) in Journal of the American Society for Mass Spectrometry
- Vol. 22 (8), 1363-1372
- https://doi.org/10.1007/s13361-011-0137-5
Abstract
Direct detection of pseudouridine (ψ), an isomer of uridine, in RNA is challenging. The most popular method requires chemical derivatization using N-cyclohexyl-N'-β-(4-methylmorpholinum ethyl) carb...Keywords
This publication has 34 references indexed in Scilit:
- A Quantitative Systems Approach Reveals Dynamic Control of tRNA Modifications during Cellular StressPLoS Genetics, 2010
- Relative quantitation of transfer RNAs using liquid chromatography mass spectrometry and signature digestion productsNucleic Acids Research, 2010
- Identification, localization, and relative quantitation of pseudouridine in RNA by tandem mass spectrometry of hydrolysis productsInternational Journal of Mass Spectrometry, 2010
- tRNAdb 2009: compilation of tRNA sequences and tRNA genesNucleic Acids Research, 2008
- Mass spectrometry of the fifth nucleoside: A review of the identification of pseudouridine in nucleic acidsAnalytica Chimica Acta, 2008
- Improving CMC-derivatization of pseudouridine in RNA for mass spectrometric detectionAnalytica Chimica Acta, 2008
- Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6 -methyladenosineNucleic Acids Research, 2007
- Influence of Phylogeny on Posttranscriptional Modification of rRNA in Thermophilic Prokaryotes: The Complete Modification Map of 16S rRNA of Thermus thermophilusBiochemistry, 2006
- Detection of the Common RNA Nucleoside Pseudouridine in Mixtures of Oligonucleotides by Mass SpectrometryAnalytical Chemistry, 2005
- Mapping Pseudouridines in RNA MoleculesMethods, 2001