Protein Boson Peak Originated from Hydration-Related Multiple Minima Energy Landscape
- 25 May 2005
- journal article
- Published by American Chemical Society (ACS) in Journal of the American Chemical Society
- Vol. 127 (24), 8705-8709
- https://doi.org/10.1021/ja0425886
Abstract
The boson peak is a broad peak found in the low-frequency region of inelastic neutron and Raman scattering spectra in many glassy materials, including biopolymers below ∼200 K. Here, we give a novel insight into the origins of the protein boson peak, which may also be valid for materials other than proteins. Molecular simulation reveals that the structured water molecules around a protein molecule increase the number of local minima in the protein energy landscape, which plays a key role in the origin of the boson peak. The peak appears when the protein dynamics are trapped within a local energy minimum at cryogenic temperatures. This trapping causes very low frequency collective motions to shift to higher frequencies. We demonstrate that the characteristic frequency of such systems shifts higher as the temperature decreases also in model one-dimensional energy surfaces with multiple minima.Keywords
This publication has 30 references indexed in Scilit:
- Phonon interpretation of the ‘boson peak’ in supercooled liquidsNature, 2003
- Effects of solvent damping on side chain and backbone contributions to the protein boson peakThe Journal of Chemical Physics, 2001
- How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?Journal of Computational Chemistry, 2000
- Hyper-Raman Scattering Observation of the Boson Peak in Vitreous SilicaPhysical Review Letters, 2000
- The Temperature Dependence of Internal Molecular Motions in Hydrated and Dry α-Amylase: The Role of Hydration Water in the Dynamical Transition of ProteinsBiophysical Journal, 1999
- Neutron Scattering Study of the Vibration-Relaxation Crossover in Amorphous PolycarbonatesPhysical Review Letters, 1994
- Effect of Solvent on Collective Motions in Globular ProteinJournal of Molecular Biology, 1993
- Temperature Dependence of dynamics of hydrated myoglobinJournal of Molecular Biology, 1990
- Neutron scattering in almost-classical liquidsPhysical Review A, 1985
- Comparison of simple potential functions for simulating liquid waterThe Journal of Chemical Physics, 1983