GenomeDiagram: a python package for the visualization of large-scale genomic data

Abstract

Summary: We present GenomeDiagram, a flexible, open-source Python module for the visualization of large-scale genomic, comparative genomic and other data with reference to a single chromosome or other biological sequence. GenomeDiagram may be used to generate publication-quality vector graphics, rastered images and in-line streamed graphics for webpages. The package integrates with datatypes from the BioPython project, and is available for Windows, Linux and Mac OS X systems. Availability: GenomeDiagram is freely available as source code (under GNU Public License) at , and requires Python 2.3 or higher, and recent versions of the ReportLab and BioPython packages. Contact:lpritc@scri.ac.uk Supplementary Information A user manual, example code and images are available at