Cytoscape Web: an interactive web-based network browser
Top Cited Papers
Open Access
- 23 July 2010
- journal article
- research article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 26 (18), 2347-2348
- https://doi.org/10.1093/bioinformatics/btq430
Abstract
Summary: Cytoscape Web is a web-based network visualization tool–modeled after Cytoscape–which is open source, interactive, customizable and easily integrated into web sites. Multiple file exchange formats can be used to load data into Cytoscape Web, including GraphML, XGMML and SIF. Availability and Implementation: Cytoscape Web is implemented in Flex/ActionScript with a JavaScript API and is freely available at http://cytoscapeweb.cytoscape.org/ Contact:gary.bader@utoronto.ca Supplementary information: Supplementary data are available at Bioinformatics online.Keywords
This publication has 6 references indexed in Scilit:
- The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene functionNucleic Acids Research, 2010
- STRING 8--a global view on proteins and their functional interactions in 630 organismsNucleic Acids Research, 2008
- iRefIndex: A consolidated protein interaction database with provenanceBMC Bioinformatics, 2008
- jSquid: a Java applet for graphical on-line network explorationBioinformatics, 2008
- Medusa: a simple tool for interaction graph analysisBioinformatics, 2005
- Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction NetworksGenome Research, 2003