Flexible Fitting of Atomic Structures into Electron Microscopy Maps Using Molecular Dynamics
Top Cited Papers
- 1 May 2008
- Vol. 16 (5), 673-683
- https://doi.org/10.1016/j.str.2008.03.005
Abstract
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This publication has 52 references indexed in Scilit:
- Protein Structure Fitting and Refinement Guided by Cryo-EM DensityStructure, 2008
- Combining Efficient Conformational Sampling with a Deformable Elastic Network Model Facilitates Structure Refinement at Low ResolutionStructure, 2007
- Transfer RNA in the hybrid P/E state: Correlating molecular dynamics simulations with cryo-EM dataProceedings of the National Academy of Sciences, 2007
- Exploring transmembrane transport through α-hemolysin with grid-steered molecular dynamicsThe Journal of Chemical Physics, 2007
- Structure of the 70 S Ribosome Complexed with mRNA and tRNAScience, 2006
- Scalable molecular dynamics with NAMDJournal of Computational Chemistry, 2005
- Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EMJournal of Structural Biology, 2004
- All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of ProteinsThe Journal of Physical Chemistry B, 1998
- VMD: Visual molecular dynamicsJournal of Molecular Graphics, 1996
- Restrained real-space macromolecular atomic refinement using a new resolution-dependent electron-density functionActa Crystallographica Section A Foundations of Crystallography, 1995