Induced Fit and the Entropy of Structural Adaptation in the Complexation of CAP and λ-Repressor with Cognate DNA Sequences
- 1 May 2005
- journal article
- Published by Elsevier in Biophysical Journal
- Vol. 88 (5), 3147-3157
- https://doi.org/10.1529/biophysj.104.053843
Abstract
No abstract availableKeywords
Funding Information
- University of Illinois at Urbana-Champaign
- National Institutes of Health (GM 37909)
This publication has 88 references indexed in Scilit:
- Molecular dynamics simulations of biomoleculesNature Structural & Molecular Biology, 2002
- The Hidden Thermodynamics of a Zinc FingerJournal of Molecular Biology, 2002
- Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: alteration of DNA binding specificity through alteration of DNA kinkingJournal of Molecular Biology, 2001
- Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: DNA binding specificity based on energetics of DNA kinkingJournal of Molecular Biology, 2001
- Mean DNA Bend Angle and Distribution of DNA Bend Angles in the CAP-DNA Complex in SolutionJournal of Molecular Biology, 2001
- Structure and thermodynamics of RNA-protein binding: using molecular dynamics and free energy analyses to calculate the free energies of binding and conformational change11Edited by B. HonigJournal of Molecular Biology, 2000
- Topological Measurement of Protein-induced DNA Bend AnglesJournal of Molecular Biology, 1996
- Refined 1.8 Å crystal structure of the λ repressor-operator complexJournal of Molecular Biology, 1992
- Molecular dynamics with coupling to an external bathThe Journal of Chemical Physics, 1984
- Comparison of simple potential functions for simulating liquid waterThe Journal of Chemical Physics, 1983