DNA methylation as an epigenetic regulator of neural 5‐lipoxygenase expression: evidence in human NT2 and NT2‐N cells

Abstract

Increased expression of 5‐lipoxygenase is associated with various neuropathologies and may be related to epigenetic gene regulation. DNA methylation in promoter regions is typically associated with gene silencing. We found that human NT2 cells, which differentiate into neuron‐like NT2‐N cells, express 5‐lipoxygenase and we investigated the relationship between 5‐lipoxygenase expression and the methylation state of the 5‐lipoxygenase core promoter. We used the demethylating agent 5‐aza‐2′‐deoxycytidine and the histone deacetylase inhibitor valproate to alter DNA methylation and to induce histone modifications. 5‐Lipoxygenase expression and DNA methylation were assayed with RT‐PCR and bisulfite genomic sequencing, respectively. Neuronal differentiation of proliferating NT2 precursors decreased 5‐lipoxygenase expression. 5‐Aza‐2′‐deoxycytidine increased 5‐lipoxygenase mRNA levels only in proliferating cells, whereas valproate increased 5‐lipoxygenase mRNA levels in a cell cycle‐independent manner. In both precursors and differentiated cells, CpG dinucleotides of the promoter were poorly methylated. In precursors, both 5‐aza‐2′‐deoxycytidine and valproate further reduced the number of methylated CpGs. Moreover, we found evidence for cytosine methylation in CpWpG (W = adenine or thymine) and other asymmetrical sequences; CpWpG methylation was reduced by valproate in NT2‐N but not in NT2 cells. This is the first report demonstrating that the dynamics of DNA methylation relates to neural 5‐lipoxygenase gene expression.