Adaptive molecular resolution via a continuous change of the phase space dimensionality
- 9 January 2007
- journal article
- research article
- Published by American Physical Society (APS) in Physical Review E
- Vol. 75 (1), 017701
- https://doi.org/10.1103/physreve.75.017701
Abstract
For the study of complex synthetic and biological molecular systems by computer simulations one is still restricted to simple model systems or by far too small time scales. To overcome this problem multiscale techniques are being developed. However, in almost all cases, the regions and molecules of different resolution are kept fixed and are not in equilibrium with each other. We here give a basic theoretical framework for an efficient and flexible coupling of the different regimes. The approach leads to a concept, which can be seen as a geometry-induced phase transition, and to a counterpart of the equipartition theorem for fractional degrees of freedom. This represents the initial step in developing a general theoretical framework for computer simulation methods applying simultaneously different levels of resolution.Keywords
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This publication has 34 references indexed in Scilit:
- Coarse-Grained Model of Proteins Incorporating Atomistic Detail of the Active SitePhysical Review Letters, 2005
- Hydrogen Embrittlement of Aluminum: The Crucial Role of VacanciesPhysical Review Letters, 2005
- First principles assessment of ideal fracture energies of materials with mobile impurities: implications for hydrogen embrittlement of metalsActa Materialia, 2004
- BPA-PC on a Ni(111) Surface: The Interplay between Adsorption Energy and Conformational Entropy for Different Chain-End ModificationsJournal of the American Chemical Society, 2004
- Multiscale Method for Simulating Protein-DNA ComplexesMultiscale Modeling & Simulation, 2004
- Polymers near Metal Surfaces: Selective Adsorption and Global ConformationsPhysical Review Letters, 2002
- Cracks and Crazes: On Calculating the Macroscopic Fracture Energy of Glassy Polymers from Molecular SimulationsPhysical Review Letters, 2002
- Concurrent coupling of length scales: Methodology and applicationPhysical Review B, 1999
- A combined molecular dynamics and finite element method technique applied to laser induced pressure wave propagationComputer Physics Communications, 1999
- A multi-scale atomistic-continuum modelling of crack propagation in a two-dimensional macroscopic plateJournal of Physics: Condensed Matter, 1998