A multidimensional analysis of genes mutated in breast and colorectal cancers
Open Access
- 10 August 2007
- journal article
- Published by Cold Spring Harbor Laboratory in Genome Research
- Vol. 17 (9), 1304-1318
- https://doi.org/10.1101/gr.6431107
Abstract
A recent study of a large number of genes in a panel of breast and colorectal cancers identified somatic mutations in 1149 genes. To identify potential biological processes affected by these genes, we examined their putative roles based on sequence similarity, membership in known functional groups and pathways, and predicted interactions with other proteins. These analyses identified functional groups and pathways that were enriched for mutated genes in both tumor types. Additionally, the results pointed to differences in molecular mechanisms that underlie breast and colorectal cancers, including various intracellular signaling and metabolic pathways. These studies provide a multidimensional framework to guide further research and help identify cellular processes critical for malignant progression and therapeutic intervention.Keywords
This publication has 28 references indexed in Scilit:
- The Consensus Coding Sequences of Human Breast and Colorectal CancersScience, 2006
- Global topological features of cancer proteins in the human interactomeBioinformatics, 2006
- Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profilesProceedings of the National Academy of Sciences, 2005
- Cancer genes and the pathways they controlNature Medicine, 2004
- Nuclear transport and cancer: from mechanism to interventionNature Reviews Cancer, 2004
- A Map of the Interactome Network of the Metazoan C. elegansScience, 2004
- A Protein Interaction Map of Drosophila melanogasterScience, 2003
- A comprehensive two-hybrid analysis to explore the yeast protein interactomeProceedings of the National Academy of Sciences, 2001
- Basic Local Alignment Search ToolJournal of Molecular Biology, 1990
- Basic local alignment search toolJournal of Molecular Biology, 1990