Hydrogen bonding of phosphodiesters to water, methanol, and methylamine as studied by the CNDO/2 method
- 1 September 1981
- journal article
- research article
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 75 (5), 2281-2289
- https://doi.org/10.1063/1.442290
Abstract
Hydrogen bonding of dimethylphosphate anion (DMP) and dimethyl phosphoric acid (DMPH) with water, methanol, and methylamine was studied using the CNDO/2 molecular orbital method. The computed lengths of O–H⋅⋅⋅O hydrogen bonds involving the phosphate group were significantly shorter than were the computed values for nonphosphate O–H⋅⋅⋅O bonds, in agreement with experiment. The lowest energy for the monohydration of DMP or DMPH was obtained for the linear hydrogen bond in which the atoms of water were coplanar with the anionic oxygens of the phosphate group. The hydrogen bond strengths of methanol and water with DMP or DMPH were of comparable magnitude, but the N–H⋅⋅⋅O bond involving methylamine and DMP was about 25% weaker. The C–H⋅⋅⋅O interaction between the methyl group of methanol or methylamine and the phosphoryl oxygen was also examined and found to have all the characteristics (bond strength, charge transfer, and atomic polarization) of a hydrogen bond. The computed bond strength for HOCH3⋅⋅⋅DMP was −7.1 kcal/mole, as compared to −21.8 kcal/mole for a conventional CH3OH⋅⋅⋅DMP hydrogen bondinginteraction.Keywords
This publication has 43 references indexed in Scilit:
- Quantum and statistical mechanical studies of liquids. 3. Deriving intermolecular potential functions for the water dimer from ab initio calculationsJournal of the American Chemical Society, 1979
- Conformation of the choline phosphate zwitterion. Crystal and molecular structure of cyclopentylphosphorylcholine monohydrate, [(CH3)3N+CH2CH2O](c-C5H9O)P(O).lovin.O.H2OJournal of the American Chemical Society, 1978
- An ab initio study of the effect of the 3d orbitals of phosphorus on the properties of the phosphate groupTheoretical Chemistry Accounts, 1975
- Intermolecular potentials from crystal data. III. Determination of empirical potentials and application to the packing configurations and lattice energies in crystals of hydrocarbons, carboxylic acids, amines, and amidesThe Journal of Physical Chemistry, 1974
- Theory of molecular interactions. III. A comparison of studies of H2O polymers using different molecular-orbital basis setsThe Journal of Chemical Physics, 1973
- Molecular structures of amino acids and peptides. II. A redetermination of the crystal structure of L-O-serine phosphate. A very short phosphate–carboxyl hydrogen bondActa Crystallographica Section B: Structural Science, Crystal Engineering and Materials, 1970
- Hydrogen bonded dimers and polymers involving hydrogen fluoride, water, and ammoniaJournal of the American Chemical Society, 1970
- Energy parameters in polypeptides. II. Semiempirical molecular orbital calculations for model peptidesThe Journal of Physical Chemistry, 1970
- Stereochemistry of nucleic acids and polynucleotides. VI. Minimum energy conformations of dimethyl phosphateBiopolymers, 1969
- The Crystal and Molecular Structure of Methyl Pinacol PhosphateJournal of the American Chemical Society, 1966