TRAJAN: A tool for analyzing trajectories from molecular simulations
- 30 June 1996
- journal article
- Published by Elsevier in Journal of Molecular Graphics
- Vol. 14 (3), 173-182
- https://doi.org/10.1016/s0263-7855(96)00059-8
Abstract
No abstract availableKeywords
This publication has 24 references indexed in Scilit:
- Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics programComputer Physics Communications, 1995
- The computation of a potential of mean force: Choice of the biasing potential in the umbrella sampling techniqueThe Journal of Chemical Physics, 1994
- Essential dynamics of proteinsProteins-Structure Function and Bioinformatics, 1993
- Partitioning the motion in molecular dynamics simulations into characteristic modes of motionJournal of Computational Chemistry, 1993
- Statistical clustering techniques for the analysis of long molecular dynamics trajectories: analysis of 2.2-ns trajectories of YPGDVBiochemistry, 1993
- FOCUS: a program for analyzing molecular dynamics simulations, featuring digital signal-processing techniquesJournal of Molecular Graphics and Modelling, 1992
- Introduction of a stabilizing 10 residue β-hairpin in Bacillus subtilis neutral proteaseProtein Engineering, Design and Selection, 1992
- Contribution of the C-terminal amino acid to the stability of Bacillus subtilis neutral proteaseProtein Engineering, Design and Selection, 1990
- Filtering molecular dynamics trajectories to reveal low-frequency collective motions: Phospholipase A2Journal of Molecular Biology, 1989
- CHARMM: A program for macromolecular energy, minimization, and dynamics calculationsJournal of Computational Chemistry, 1983