Resonance Raman analysis of the Pr and Pfr forms of phytochrome

Abstract

Resonanace Raman vibrational spectra of the Pr and Pfr froms of oat phytochrome have been obtained at room temperature. When Pr is converted to Pfr, new bands appear in the C .dbd. C and C .dbd. N stretching region at 1622, 1599, and 1552 cm-1, indicating that a major structural change of the chromophore has occurred. The Pr to Pfr conversion results in an 11 cm-1 lowering of the N-N rocking band from 1323 to 1312 cm-1. Normal mode calculations correlate this frequency drop with a Z .fwdarw. E isomerization about the C15 .dbd. C16 bond. A line at 803cm-1 in Pr is replaced by an unusually intense mode at 814 cm-1 in Pfr. Calculations on model tetrapyrrole chromophores suggest that these low-wavenumber modes are hydrogen out-of-plane (HOOP) wagging vibrations of the bridging C15 methine hydrogen and that both the intensity and frequency of the C15 HOOP mode are sensitive to the geometry around the C14-C15 and C15 .dbd. C16 bonds. The large intensity of the 814-cm-1 mode in Pfr indicates that the chromophore is highly distorted from planarity around the C115 methine bridge. If the Pr .fwdarw. Pfr conversion does involve a C15 .dbd. C16 Z .fwdarw. E isomerization, then the intensity of the C15 HOOP mode in Pfr argues that the chromophore has an E, anticonformation. On the basis of a comparison with the vibrational calculations, the low frequency (803 cm-1) and the reduced intensity of the C15 HOOP mode in Pr suggest that the chromophore in Pr adopts the C15-Z,syn conformation.