Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules
Open Access
- 15 May 2009
- journal article
- research article
- Published by International Union of Crystallography (IUCr) in Acta Crystallographica Section D-Biological Crystallography
- Vol. 65 (6), 567-573
- https://doi.org/10.1107/s0907444909011548
Abstract
X-ray and neutron crystallographic techniques provide complementary information on the structure and function of biological macromolecules. X-ray and neutron (XN) crystallographic data have been combined in a joint structure-refinement procedure that has been developed using recent advances in modern computational methodologies, including cross-validated maximum-likelihood target functions with gradient-based optimization and simulated annealing. The XN approach for complete (including hydrogen) macromolecular structure analysis provides more accurate and complete structures, as demonstrated for diisopropyl fluorophosphatase, photoactive yellow protein and human aldose reductase. Furthermore, this method has several practical advantages, including the easier determination of the orientation of water molecules, hydroxyl groups and some amino-acid side chains.Keywords
This publication has 19 references indexed in Scilit:
- Rapid determination of hydrogen positions and protonation states of diisopropyl fluorophosphatase by joint neutron and X-ray diffraction refinementProceedings of the National Academy of Sciences, 2009
- Neutron crystallography: opportunities, challenges, and limitationsCurrent Opinion in Structural Biology, 2008
- On the determinants of amide backbone exchange in proteins: a neutron crystallographic comparative studyActa Crystallographica Section D-Biological Crystallography, 2008
- Quantum model of catalysis based on a mobile proton revealed by subatomic x-ray and neutron diffraction studies of h-aldose reductaseProceedings of the National Academy of Sciences, 2008
- Neutron protein crystallography: beyond the folding structure of biological macromoleculesActa Crystallographica Section A Foundations of Crystallography, 2007
- Neutron and X-ray structural studies of short hydrogen bonds in photoactive yellow protein (PYP)Acta Crystallographica Section D-Biological Crystallography, 2007
- Neutron crystallographic study on rubredoxin from Pyrococcus furiosus by BIX-3, a single-crystal diffractometer for biomacromoleculesProceedings of the National Academy of Sciences, 2004
- The Protein Data BankActa Crystallographica Section D-Biological Crystallography, 2002
- Crystallography & NMR System: A New Software Suite for Macromolecular Structure DeterminationActa Crystallographica Section D-Biological Crystallography, 1998
- Cross-validated maximum likelihood enhances crystallographic simulated annealing refinementProceedings of the National Academy of Sciences, 1997