Protein structure topological comparison, discovery and matching service
Open Access
- 1 March 2005
- journal article
- research article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 21 (10), 2537-2538
- https://doi.org/10.1093/bioinformatics/bti331
Abstract
Summary: We describe a fold level fast protein comparison and motif matching facility based on the TOPS representation of structure. This provides an update to a previous service at the EBI, with a better graph matching with faster results and visualization of both the structures being compared against and the common pattern of each with the target domain. Availability: Web service at http://balabio.dcs.gla.ac.uk/tops or via the main TOPS site at http://www.tops.leeds.ac.uk. Software is also available for download from these sites. Contact:tops@brc.dcs.gla.ac.ukKeywords
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