Optimization of parameters for semiempirical methods V: Modification of NDDO approximations and application to 70 elements
Top Cited Papers
Open Access
- 9 September 2007
- journal article
- research article
- Published by Springer Nature in Journal of Molecular Modeling
- Vol. 13 (12), 1173-1213
- https://doi.org/10.1007/s00894-007-0233-4
Abstract
Several modifications that have been made to the NDDO core-core interaction term and to the method of parameter optimization are described. These changes have resulted in a more complete parameter optimization, called PM6, which has, in turn, allowed 70 elements to be parameterized. The average unsigned error (AUE) between calculated and reference heats of formation for 4,492 species was 8.0 kcal mol−1. For the subset of 1,373 compounds involving only the elements H, C, N, O, F, P, S, Cl, and Br, the PM6 AUE was 4.4 kcal mol−1. The equivalent AUE for other methods were: RM1: 5.0, B3LYP 6–31G*: 5.2, PM5: 5.7, PM3: 6.3, HF 6–31G*: 7.4, and AM1: 10.0 kcal mol−1. Several long-standing faults in AM1 and PM3 have been corrected and significant improvements have been made in the prediction of geometries. Calculated structure of the complex ion [Ta6Cl12]2+ (footnote): Reference value in parenthesisKeywords
This publication has 32 references indexed in Scilit:
- A PM3/d specific reaction parameterization for iron atom in the hydrogen abstraction catalyzed by soybean lipoxygenase-1Journal of Computational Chemistry, 2007
- Can the semiempirical PM3 scheme describe iron‐containing bioinorganic molecules?Journal of Computational Chemistry, 2006
- Specific parametrisation of a hybrid potential to simulate reactions in phosphatasesPhysical Chemistry Chemical Physics, 2006
- A Semiempirical Quantum Model for Hydrogen-Bonded Nucleic Acid Base PairsJournal of Chemical Theory and Computation, 2005
- AM1* parameters for aluminum, silicon, titanium and zirconiumJournal of Molecular Modeling, 2005
- Optimization of parameters for semiempirical methods IV: extension of MNDO, AM1, and PM3 to more main group elementsJournal of Molecular Modeling, 2004
- AM1/d Parameters for MolybdenumThe Journal of Physical Chemistry A, 2000
- Atomic charges derived from a fast and accurate method for electrostatic potentials based on modified AM1 calculationsJournal of Computational Chemistry, 1994
- Extension of the MNDO formalism tod orbitals: Integral approximations and preliminary numerical resultsTheoretical Chemistry Accounts, 1992
- CohesionProceedings of the Physical Society, 1931