From RNA-seq reads to differential expression results
Top Cited Papers
Open Access
- 22 December 2010
- journal article
- review article
- Published by Springer Nature in Genome Biology
- Vol. 11 (12), 1-10
- https://doi.org/10.1186/gb-2010-11-12-220
Abstract
Many methods and tools are available for preprocessing high-throughput RNA sequencing data and detecting differential expression.Keywords
This publication has 91 references indexed in Scilit:
- Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modificationsNature Biotechnology, 2010
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiationNature Biotechnology, 2010
- Transcriptome genetics using second generation sequencing in a Caucasian populationNature, 2010
- Understanding mechanisms underlying human gene expression variation with RNA sequencingNature, 2010
- Computation for ChIP-seq and RNA-seq studiesNature Methods, 2009
- Human DNA methylomes at base resolution show widespread epigenomic differencesNature, 2009
- Transcriptome sequencing to detect gene fusions in cancerNature, 2009
- A large genome center's improvements to the Illumina sequencing systemNature Methods, 2008
- Next-generation DNA sequencingNature Biotechnology, 2008
- Mapping and quantifying mammalian transcriptomes by RNA-SeqNature Methods, 2008