Adaptive resolution scheme for efficient hybrid atomistic-mesoscale molecular dynamics simulations of dense liquids
- 2 June 2006
- journal article
- research article
- Published by American Physical Society (APS) in Physical Review E
- Vol. 73 (6), 066701
- https://doi.org/10.1103/physreve.73.066701
Abstract
The adaptive resolution scheme (AdResS) for efficient hybrid particle-based atomistic/mesoscale molecular dynamics (MD) simulations recently introduced by us, [J. Chem. Phys. 123, 224106 (2005)] is extended to high density molecular liquids with spherical boundaries between the atomistic and mesoscale regions. The key feature of this approach is that it allows for a dynamical change of the number of molecular degrees of freedom during the course of a MD simulation by an on-the-fly switching between the atomistic and mesoscopic levels of detail. Pressure and density variations occurring at the atomistic/mesoscale boundary in the original version are considerably reduced employing the improved methodology presented here.Keywords
This publication has 30 references indexed in Scilit:
- Concurrent dual-resolution Monte Carlo simulation of liquid methaneThe Journal of Chemical Physics, 2005
- Adaptive resolution molecular-dynamics simulation: Changing the degrees of freedom on the flyThe Journal of Chemical Physics, 2005
- Coarse-Grained Model of Proteins Incorporating Atomistic Detail of the Active SitePhysical Review Letters, 2005
- Dual‐Scale Modeling of Benzene Adsorption onto Ni(111) and Au(111) Surfaces in Explicit WaterChemphyschem, 2005
- BPA-PC on a Ni(111) Surface: The Interplay between Adsorption Energy and Conformational Entropy for Different Chain-End ModificationsJournal of the American Chemical Society, 2004
- Multiscale Method for Simulating Protein-DNA ComplexesMultiscale Modeling & Simulation, 2004
- Dual-resolution coarse-grained simulation of the bisphenol--polycarbonate/nickel interfacePhysical Review E, 2003
- Polymers near Metal Surfaces: Selective Adsorption and Global ConformationsPhysical Review Letters, 2002
- Coarse-Graining in Polymer Simulation: From the Atomistic to the Mesoscopic Scale and BackChemphyschem, 2002
- A uniqueness theorem for fluid pair correlation functionsPhysics Letters A, 1974